PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029633.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 278aa    MW: 30564 Da    PI: 8.5956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029633.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-191362255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +g+WvAeI+d      k+ r +lg+f+taeeAa+a+++a+  l+g
  HL.SW.v1.0.G029633.1 13 KFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFDTAEEAARAYDEAACLLRG 62
                          799******.7*********33....36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-381376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-281371IPR001471AP2/ERF domain
CDDcd000181.36E-321371No hitNo description
PROSITE profilePS5103220.061370IPR001471AP2/ERF domain
PfamPF008472.1E-131362IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-201371IPR016177DNA-binding domain
PRINTSPR003673.6E-81425IPR001471AP2/ERF domain
PRINTSPR003673.6E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRATAIKAT KNKFVGVRQR PSGKWVAEIK DTTKKIRMWL GTFDTAEEAA RAYDEAACLL  60
RGSNTRTNFA NRVPTDSQLS LRIRNLLNRK KSLKQSNPTT VSTSVVSVGS NTMRDCFHFN  120
NTNQKSNSTT TNYASSSSLS GFINQSNLVF DGAYKPDMSN CIVEPHQGMA HFDYTWPFPI  180
GFDQIPMTHQ GMELTKGVDS LSTSPSSSSS QSSSSSSTAA AEAEVEFTEF GRMKLERQIS  240
ASLYAMNGVN EHIGYAYDST TDAHWDLSAF YQLFCPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-151473363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112638.11e-115Ethylene-responsive transcription factor
TrEMBLW9SBA41e-115W9SBA4_9R
STRINGVIT_06s0004g00490.t011e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-48related to AP2 11